SubtiBank SubtiBank
iolS [2018-02-08T11:56:08.000Z]
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iolS [2018-02-08T11:56:08.000Z]

similar to dehydrogenase, may be involved in myo-inositol catabolism
locus
BSU39780
pI
5.38
mw
35.01 kDa
protein length
310 aa Sequence Blast
gene length
930 bp Sequence Blast
function
unknown, may be involved in myo-inositol catabolism
product
unknown
essential
no
synonyms
yxbF
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.16|Utilization of inositol]

    • Gene

    Coordinates
    4,085,608 → 4,086,540

    The protein

    Protein family

  • aldo/keto reductase 2 family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|B73D729097C00BE6F3C7FF1708738783EE93C6FB|YccK], [protein|4DF9B105ABA64AFD5106EE75FCC9EFAB52BEFC83|YhdN], [protein|B0897643562CDB25547223CCB9CFD0F9E78710E2|YqkF]

    • Structure

  • [PDB|1PZ0] [Pubmed|15019785]

    • Expression and Regulation

    Operons

    genes
    [gene|5F4ABBC8ECAD6F6C10EC39B2B0F0BC73F11522CE|iolR]-[gene|F1AFFACD36C75702B0BB8F0B4241A9688FB6253C|iolS]
    description
    [Pubmed|9226270]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|9226270], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|5F4ABBC8ECAD6F6C10EC39B2B0F0BC73F11522CE|IolR]: repression, [Pubmed|9226270], in [regulon|5F4ABBC8ECAD6F6C10EC39B2B0F0BC73F11522CE|IolR regulon]

    • regulation

  • induced by inositol ([protein|search|IolR]) [Pubmed|9226270]
    • view in new tab

    Biological materials

    Mutant

  • BKE39780 (Δ[gene|F1AFFACD36C75702B0BB8F0B4241A9688FB6253C|iolS]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39780 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATCTGCCTCCTAGAAT, downstream forward: _UP4_TAAGAAGAAAACAGCCTTCT
  • BKK39780 (Δ[gene|F1AFFACD36C75702B0BB8F0B4241A9688FB6253C|iolS]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39780 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATCTGCCTCCTAGAAT, downstream forward: _UP4_TAAGAAGAAAACAGCCTTCT

    • Labs working on this gene/protein

  • [SW|Yasutaro Fujita], University of Fukuyama, Japan
  • [[Ken-ichi Yoshida]], Kobe University, Japan

    • References

  • 9226270,15019785,9887260,27941785